مطالعه تغییرات بیان Pdu-miR319a، Pdu-miR398a و ژن‌های هدف آن‌ها در اندام‌های زایشی بادام تحت تنش سرما

احسنی محمدرضا؛ محمدآبادی محمدرضا؛ اسدی فوزی و همکاران (1398) بیان ژن لپتین در بافت چربی زیرپوستی گاوهای هلشتاین با استفاده از Real Time PCR. مجله بیوتکنولوژی کشاورزی 11(1)، 150-135.

ایمانی علی (1379). اصلاح بادام (ترجمه). نشر آموزش کشاورزی. 128 صفحه.

توحیدی نژاد فاطمه؛ محمدآبادی محمدرضا؛ اسمعیلی زاده کشکوئیه علی؛ نجمی نوری عذرا (1393) مقایسه سطوح مختلف بیان ژنRheb  در بافت‌های مختلف بز کرکی راینی. مجله بیوتکنولوژی کشاورزی 6(4)، 50-35.

جعفری دره در امیر حسین؛ محمدآبادی محمدرضا؛ اسمعیلی زاده کشکوئیه علی؛ ریاحی مدوار علی (1395) بررسی بیان ژن CIB4  در بافت‌های مختلف گوسفند کرمانی با استفاده از Real Time qPCR. مجله پژوهش در نشخوارکنندگان 4(4)، 132-119.

سرخه کریم (1390) بررسی فیزیو‌بیو‌شیمیایی و مولکولی گونه‌‌های وحشی و ژنوتیپ‌های اهلی بادام ایران. پایان‌نامه دکتری اصلاح نباتات. دانشکده کشاورزی. دانشگاه شهرکرد. ایران.

محمدآبادی محمدرضا؛ کرد محبوبه؛ نظری محمود (1397) مطالعه بیان ژن لپتین در بافت‌های مختلف گوسفند کرمانی با استفاده از Real Time PCR. مجله بیوتکنولوژی کشاورزی 10(3)، 122-111.

موسوی صادق؛ شیران بهروز؛ ایمانی علی؛ هوشمند سعداله؛ ابراهیمی اسماعیل (1393). بررسی برخی شاخص‌های فیزیولوژیکی مرتبط با سرما‌زدگی در ارقام بادام با زمان گل‌دهی متفاوت. مجله تولید و فرآوری محصولات زراعی و باغی 12: 235-246.

References

Abla M, Sun H, Li Z  et al. (2019) Identification of miRNAs and their response to cold stress in Astragalus membranaceus. Biomolecule 9, 182.

Achard P, Gong F, Cheminant S et al. (2008) The cold-inducible CBF1 factor–dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism. Plant Cell 20, 2117-2129.

Afshari H, Parvane T( 2013) Study the effect of cold treatments on some physiological parameters of 3 cold resistance Almond cultivars. Life Sci 10, 4-16.

Ahsani MR, Mohammadabadi MR, Asadi Fozi M et al. (2019a) Effect of Roasted Soybean and Canola Seeds on Peroxisome Proliferator‐Activated Receptors Gamma (PPARG) Gene Expression and Cattle Milk Characteristics. Iran J Appl Anim Sci 9, 635-642.

Ahsani MR, Mohammadabadi MR, Asadi Fozi M et al. (2019b) Leptin gene expression in subcutaneous adipose tissue of Holstein dairy cattle using Real Time PCR. Agric Biotechnol J 11, 135-150 (In Persian).

Alisoltani A, Shiran B, Fallahi H, Ebrahimie E ( 2015) Gene regulatory network in almond (Prunus dulcis Mill.) in response to frost stress. Tree Genet Genomes 11, 100.

Bellemare DR, Shaner L, Morano  et al. (2002) Ctr6, a Vacuolar Membrane Copper Transporter in Schizosaccharomyces pombe. J Biol Chem 277, 46676-46686.

Chen C, Ridzon DA, Broomer AJ  et al. (2005) Real-time quantification of microRNAs by stem–loop RT–PCR. Nucleic Acid Res 33, e179.

Chen Y, Jiang J, Song A et al. (2013) Ambient temperature enhanced freezing tolerance of Chrysanthemum dichrum CdICE1 Arabidopsis via miR398. BMC Biol 11, 121.

Dai X, Zhao, PX (2011). psRNATarget: a plant small RNA target analysis server. Nucleic Acid Res 39, W155-W159

Danisman S (2016) TCP transcription factors at the interface between environmental challenges and the plant’s growth responses. Front Plant Sci 7,1930.

Dhanapal AP, Crisosto CH (2013) Association genetics of chilling injury susceptibility in peach (Prunus persica L. Batsch) across multiple years. Biotechnol J 3, 481-490.

Gao X, Wan F, Mateo K et al. (2009) Bacterial effector binding to ribosomal protein s3 subverts NF-kappaB function. PLoS Pathog 5, e1000708.

Gubler F, Kalla R, Roberts JK, Jacobsen JV (1995) Gibberellin-regulated expression of a myb gene in barley aleurone cells: evidence for Myb transactivation of a high-pI alpha-amylase gene promoter. The Plant Cell 7, 1879-1891.

He L, Hannon GJ (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5, 522-53.

Imani A, Mahamadkhani Y (2011) Characteristics of almond selections in relation to late frost spring. IJNRS 2, 31–34.

Imani A, Ezaddost M, Asgari F, Masoumi S, Raeisi I (2012). Evaluation the resistance of almond to frost in controlled and field conditions. IJNRS 3, 29–36.

Jafari Darehdor AH, Mohammadabadi MR, Esmailizadeh AK, Riahi Madvar A (2016) Investigating expression of CIB4 gene in different tissues of Kermani Sheep using Real Time qPCR. J Rumin Res 4, 119-132 (In Persian).

Jia X, Wang WX, Ren L et al. (2009) Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana. Plant Mol Biol Rep 71, 51-59.

Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14, 787-799.

Karimi M, Ghazanfari F, Fadaei A et al. (2016) The Small-RNA Profiles of Almond (Prunus dulcis Mill.) Reproductive Tissues in Response to Cold Stress. PLoS ONE 11, e0156519.

Liu HH, Tian X, Li YJ, Wu CA, Zheng CC (2008) Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14, 836–843.

Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using Real-Time PCR and the 2(- Delta Delta C(T)) Method. Method 25, 402-408.

Lv DK, Bai X, Li Y et al. (2010) Profiling of cold-stress-responsive miRNAs in rice by microarrays. Gene 459, 39-47.

Mallory AC, Dugas DV, Bartel DP, Bartel B (2004) MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 14, 1035-1046.

Millar AA, Gubler F (2005) The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development. The Plant Cell 17, 705-721.

Millar AA, Lohe A, Wong G (2019) Biology and Function of miR159 in Plants. Plants 8, 255.

Mohammadabadi MR, Tohidinejad F (2017) Charachteristics determination of Rheb gene and protein in Raini Cashmere goat. Iran J Appl Anim Sci 7, 289-295.

Mohammadabadi MR, Jafari AHD, Bordbar F (2017) Molecular analysis of CIB4 gene and protein in Kermani sheep. Brazil J Med Biol Res 50, e6177.

Mohammadabadi MR, Kord M, Nazari M (2018) Studying expression of leptin gene in different tissues of Kermani Sheep using Real Time PCR. Agric Biotechnol J 10, 111-122 (In Persian).

Mousavi S, Alisoltani A, Shiran B, et al. (2014) De novo transcriptome assembly and comparative analysis of differentially expressed genes in Prunus dulcis Mill. in response to freezing stress. PloS ONE 9, e104541.

Mukhopadhyay P, Tyagi AK (2015) OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways. Sci Rep 5, 9998.

Reyes JC, Muro-Pastor MI, Florencio FJ (2004) The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol 134, 1718-1732.

Rhoades MW, Reinhart BJ, Lim LP et al. (2002). Prediction of plant microRNA targets. Cell 110, 513–520.

Rubio-Piña JA, Zapata-Pérez O (2011) Isolation of total RNA from tissues rich in polyphenols and polysaccharides of mangrove plants. Electron J Biotechnol 14, 11-18.

Schwab R, Ossowski S, Riester M et al. (2006). Highly specific gene silencing by artificial microRNAs in Arabidopsis. The Plant Cell 18, 1121-1133.

Sinha S, Kukreja B, Arora P et al. (2015) The omics of cold stress responses in plants. In: Functional Genomics Perspectives. Elucidation of Abiotic Stress Signaling in Plants. Pandey GK (ed). Springer New York. pp. 143-194.

Sunkar R, Zhu JK ( 2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. The Plant Cell 16, 2001–2019.

Thiebaut F, Rojas CA, Almeida KL, et al ( 2012) Regulation of miR319 during cold stress in sugarcane. Plant Cell Environ 35, 502–512.

Tohidi nezhad F, Mohammadabadi MR, Esmailizadeh AK, Najmi Noori A (2015) Comparison of different levels of Rheb gene expression in different tissues of Raini Cashmir goat. Agric Biotechnol J 6, 35-50.

Varkonyi-Gasic E, Wu R, Wood M et al (2007). Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Method 3, 12.

Wang B, Duan CG, Wang X et al. (2015). HOS1 regulates Argonaute1 by promoting transcription of the microRNA gene MIR168b in Arabidopsis. Plant J 81, 861-870.

Wang T, Pan H, Wang J, Yang W, Cheng T, Zhang Q (2014) Identification and profiling of novel and conserved microRNAs during the flower opening process in Prunus mume via deep sequencing. Mol. Genet. Genom 289, 169-183.

Yamasaki H Abdel-Ghany SE, Cohu CM (2007) Regulation of copper homeostasis by micro-RNA in Arabidopsis. J Biol Chem 282, 16369-16378.

Yang Y, Zhang X, Su Y, (2017) miRNA alteration is an important mechanism in sugarcane response to low-temperature environment. BMC Genomic 18, 833.

Yang C, Li D, Mao D, Liu (2013) Overexpression of micro RNA 319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.). Plant Cell Environ 36, 2207-2218.

Yu X, Wang H, Lu Y et al. (2012) Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa. J Exp Bot 63, 1025-1038.

Zeng X, Xu Y, Jiang J et al. (2018) Identification of cold stress responsive microRNAs in two winter turnip rape (Brassica rapa L.) by high throughput sequencing. BMC Plant Biol 18, 52.

Zhang B, Pan X, Cobb GP (2006) Anderson TA. Plant microRNA: a small regulatory molecule with big impact. Dev Biol 289, 3-16.

Zhou B, Kang Y, Leng J, Xu Q (2019) Genome-Wide Analysis of the miRNA–mRNAs Network Involved in Cold Tolerance in Populus simonii× P. nigra. Gene 10, 430

Zhou X, Wang G, Sutoh K,  et al. (2008) Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochem Biophys Acta Gene Regul Mech 1779, 780-788.

Zhu C, Ding Y, Liu H (2011) MiR398 and plant stress responses. Physiol Plant 143, 1-9.