ارزیابی تنوع ژنتیکی و بررسی ساختار جمعیت با استفاده از نشانگر SNP در شرایط تنش سرمای دیررس بهاره در گندم نان (Triticum aestivum L)

References

Akhunov ED, Akhunova AR, Anderson OD et al. (2010) Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC genom 11, 1-22.

Alipour H, Bihamta MR, Mohammadi V et al. (2017) Genotyping-by-sequencing (GBS) revealed molecular genetic diversity of Iranian wheat landraces and cultivars. Front Plant Sci 8, 1293.

Allen AM, Barker GL, Berry ST et al. (2011) Transcript‐specific, single‐nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant biotechnol J 9, 1086-1099.

Asadi A, Askary Kelestani AR, Mirfakhraii R et al. (2018) Genetic variation of bread wheat geneotypes for some important physiological traits under chiling stress. ESCS 11, 171-183 (In Persian).

Askari N, Baghizadeh A, Mohammadabadi M (2008) Analysis of the genetic structure of Iranian indigenous Raeni cashmere goat populations using microsatellite markers. Biotechnol 2, 1-4.

Askari N, Baghizadeh A, Mohammadabadi M (2010) Study of genetic diversity in four populations of Raeini cashmere goat using ISSR markers. Modern Genet J 5, 49-56 (In Persian).

Bailey-Serres J, Parker JE, Ainsworth EA et al. (2019) Genetic strategies for improving crop yields. Nature 575, 109-118.

Baranwal D, Mishra V, Singh T (2013) Genetic diversity based on cluster and principal component analyses for yield and its contributing characters in wheat (Triticum aestivum L.). Madras Agric J 100, 320-323.

Belete Y, Shimelis H, Laing M et al. (2021) Genetic diversity and population structure of bread wheat genotypes determined via phenotypic and SSR marker analyses under drought-stress conditions. J Crop Improv. 35, 303-325.

Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172, 1165-1177.

Buckler IV ES, Thornsberry JM (2002) Plant molecular diversity and applications to genomics. Current opinion in plant biology 5, 107-111.

Cavanagh CR, Chao S, Wang S et al. (2013) Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. PNAS 110, 8057-8062.

Chao S, Zhang W, Akhunov E et al. (2009) Analysis of gene-derived SNP marker polymorphism in US wheat (Triticum aestivum L.) cultivars. Mol Breed 23, 23-33.

Charrad M, Ghazzali N, Boiteau V et al. (2012) NbClust Package. An examination of indices for determining the number of clusters.

Chen H, Xie W, He H et al. (2014) A high-density SNP genotyping array for rice biology and molecular breeding. Mol Plant 7, 541-553.

Cheong BE, Ho WWH, Biddulph B et al. (2019) Phenotyping reproductive stage chilling and frost tolerance in wheat using targeted metabolome and lipidome profiling. Metabolomics 15, 1-19.

Cheong BE, Onyemaobi O, Wing Ho Ho W et al. (2020) Phenotyping the chilling and freezing responses of young microspore stage wheat spikes using targeted metabolome and lipidome profiling. Cells 9, 1309.

Dhillon N, Singh J, Fergany M et al. (2009) Phenotypic and molecular diversity among landraces of snapmelon (Cucumis melo var. momordica) adapted to the hot and humid tropics of eastern India. Plant Genet Resour 7, 291-300.

Dodig D, Zorić M, Kobiljski B et al. (2010) Assessing drought tolerance and regional patterns of genetic diversity among spring and winter bread wheat using simple sequence repeats and phenotypic data. Crop Pasture Sci 61, 812-824.

Domiciano DS, Machado LG, Figueiredo CP et al. (2021) Incidence and risk factors for osteoporotic non-vertebral fracture in low-income community-dwelling elderly: a population-based prospective cohort study in Brazil. The São Paulo Ageing and Health (SPAH) study. Osteoporosis International 32, 747-757.

El-Rawy MA, Hassan MI (2021) Assessment of Genetic Diversity in Durum and Bread Wheat Genotypes Based on Drought Tolerance and SSR Markers. Plant Breed Biotech 9, 89-103.

Elbasyoni IS, Lorenz A, Guttieri M et al. (2018) A comparison between genotyping-by-sequencing and array-based scoring of SNPs for genomic prediction accuracy in winter wheat. Plant Sci 270, 123-130.

Eltaher S, Sallam A, Belamkar V et al. (2018) Genetic diversity and population structure of F3: 6 Nebraska winter wheat genotypes using genotyping-by-sequencing. Front genet 9, 76.

Esmaeili H, Karami A, Hadian J et al. (2020) Genetic structure and variation in Iranian licorice (Glycyrrhiza glabra L.) populations based on morphological, phytochemical and simple sequence repeats markers. Ind Crops Prod 145, 112140.

Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7, 574-578.

Farahani S, Maleki M, Mehrabi R et al. (2019) Whole genome diversity, population structure, and linkage disequilibrium analysis of chickpea (Cicer arietinum L.) genotypes using genome-wide DArTseq-based SNP markers. Genes 10, 676.

Frederiks T, Christopher J, Sutherland M et al. (2015) Post-head-emergence frost in wheat and barley: defining the problem, assessing the damage, and identifying resistance. J Exp Bot 66, 3487-3498.

Fuller MP, Fuller AM, Kaniouras S et al. (2007) The freezing characteristics of wheat at ear emergence. Eur J Agron 26, 435-441.

Ghasemi M, Baghizadeh A, Abadi M (2010) Determination of genetic polymorphism in Kerman Holstein and Jersey cattle population using ISSR markers. Aust j basic appl sci 4, 5758-5760.

Gholamhoseinzadeh Gooki F, Mohammadabadi M, Asadi Fozi M (2018) Polymorphism of the growth hormone gene and its effect on production and reproduction traits in goat. Iranian J Appl Anim Res 8, 653-659.

Goli A, Jorjani I, Sabouri H et al. (2016) Assessment of genetic diversity of facultative wheat genotypes belong to north of Iran using ISSR markers. J Crop Breed 8, 165-174 (In Persian).

Gooki FG, Mohammadabadi M, Fozima et al. (2019) Association of biometric traits with growth hormone gene diversity in Raini Cashmere goats. Walailak J Sci Technol 16(7), 499-508.

Gostimsky S, Kokaeva Z, Konovalov F (2005) Studying plant genome variation using molecular markers. Russian J of Genet 41, 378-388.

Granato IS, Galli G, de Oliveira Couto EG et al. (2018) snpReady: a tool to assist breeders in genomic analysis. Mol Breed 38, 1-7.

Khan MK, Pandey A, Thomas G et al. (2015) Genetic diversity and population structure of wheat in India and Turkey. AoB Plants 7.

Khodadadi M, Fotokian MH, Miransari M (2011) Genetic diversity of wheat (Triticum aestivum L.) genotypes based on cluster and principal component analyses for breeding strategies. Aust J Crop Sci 5, 17-24.

Kumar D, Chhokar V, Sheoran S et al. (2020) Characterization of genetic diversity and population structure in wheat using array based SNP markers. Mol Biol Rep 47, 293-306.

Li X, Cai J, Liu F et al. (2015) Wheat plants exposed to winter warming are more susceptible to low temperature stress in the spring. J Plant Growth Regul 77, 11-19.

Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27, 209-220.

Mdluli SY, Shimelis H, Amelework AB (2020) Genetic diversity and population structure of elite drought tolerant bread wheat ('Triticum aestivum'l.) genotypes. Aust J Crop Sci 14, 1362-1371.

Mohammadabadi M, Esfandyarpoor E, Mousapour A (2017) Using inter simple sequence repeat multi-loci markers for studying genetic diversity in Kermani sheep. J res Dev 5, e154.

Mohammadifar A, Mohammadabadi M (2012) Application of microsatellite markers for a study of Kermani sheep genome. Iran J Anim Sci 42, 337-344.(In Persian)

Mohammadifar A, Mohammadabadi M (2018) Melanocortin-3 receptor (mc3r) gene association with growth and egg production traits in Fars indigenous chicken. Malays Appl Biol 47, 85-90.

Nazari M, Abdolshahi R (2014) Evaluation of genetic diversity in bread wheat cultivars (Triticum aestivum L.) using morpho-physiological traits and SSR markers. J Agric Biotechnol 6, 215-231 (In Persian).

Nazarzadeh Z, Onsori H, Akrami S (2020) Genetic diversity of bread wheat (Triticum aestivum L.) genotypes using RAPD and ISSR molecular markers. J of Genetic Res 6, 69-76.

Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89, 583-590.

Nielsen NH, Backes G, Stougaard J et al. (2014) Genetic diversity and population structure analysis of European hexaploid bread wheat (Triticum aestivum L.) varieties. PLoS One 9, e94000.

Nkhoma N, Shimelis H, Laing MD et al. (2020) Assessing the genetic diversity of cowpea )Vigna unguiculata (L.) Walp.( germplasm collections using phenotypic traits and SNP markers. BMC genetics 21, 1-16.

Parker G, Fox P, Langridge P et al. (2002) Genetic diversity within Australian wheat breeding programs based on molecular and pedigree data. Euphytica 124, 293-306.

Peterson GW, Dong Y, Horbach C et al. (2014) Genotyping-by-sequencing for plant genetic diversity analysis: a lab guide for SNP genotyping. Diversity 6, 665-680.

Poudel A, Thapa DB, Sapkota M (2017) Assessment of genetic diversity of bread wheat (Triticum aestivum L.) genotypes through cluster and principal component analysis. Int J Exp 11, 1-9.

Rohallah A, Mohammadreza MA, Shahin MB (2007) Kappa-casein gene study in Iranian Sistani cattle breed (Bos indicus) using PCR-RFLP. Pak J Bio. Sci 10, 4291-4294.

Saremi Rad B, Shokrpor M, Sofalian O et al. (2016) Evaluation of genetic diversity of wheat genotypes by AFLP markers. J of Crop Breed 7, 89-96.

Shabannejad M, Bihamta M-R, Majidi-Hervan E et al. (2022) Assessment of genetic diversity of some Iran bread wheat (Triticum aestivum L.) landraces using multivariate statistical analysis. ESCS 15, 1-17 (In Persian).

Shakiba E, Edwards JD, Jodari F et al. (2017) Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis. PloS one 12, e0172133.

Shamuyarira KW, Shimelis H, Mathew I et al. (2022) Comparative genetic diversity analysis for biomass allocation and drought tolerance in wheat. Agronomy 12, 1457.

Shete S, Tiwari H, Elston RC (2000) On estimating the heterozygosity and polymorphism information content value. Theor Popul Biol 57, 265-271.

Sönmezoğlu ÖA, Çevik E, Aksoy Terzi B (2022) Assessment of some bread wheat (Triticum aestivum L.) genotypes for drought tolerance using SSR and ISSR markers.

Spanic V, Korzun V, Ebmeyer E (2016) Assessing genetic diversity of wheat genotypes from different origins by SNP markers. Cereal Res Commun 44, 361-369.

Tehseen MM, Istipliler D, Kehel Z et al. (2021) Genetic diversity and population structure analysis of Triticum aestivum L. landrace panel from Afghanistan. Genes 12, 340.

Thakur P, Kumar S, Malik JA et al. (2010) Cold stress effects on reproductive development in grain crops: an overview. Environmental and Experimental Botany 67, 429-443.

Thomson MJ (2014) High-throughput SNP genotyping to accelerate crop improvement. Plant Breed Biotech 2, 195-212.

Valluru R, Link J, Claupein W (2012) Consequences of early chilling stress in two Triticum species: plastic responses and adaptive significance. Plant Biology 14, 641-651.

Verma H, Borah J, Sarma R (2019) Variability assessment for root and drought tolerance traits and genetic diversity analysis of rice germplasm using SSR markers. Sci Rep 9, 1-19.

Verma S, Gupta S, Bandhiwal N et al. (2015) High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS). Sci Rep 5, 1-14.

Visioni A, Tondelli A, Francia E et al. (2013) Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.). BMC genomics 14, 1-13.

Voss‐Fels K, Frisch M, Qian L et al. (2015) Subgenomic diversity patterns caused by directional selection in bread wheat gene pools. The Plant Genome 8, plantgenome2015.2003.0013.

Weir BS, Goudet J (2017) A unified characterization of population structure and relatedness. Genetics 206, 2085-2103.

You Q, Yang X, Peng Z et al. (2018) Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array. Front Plant Sci 9, 104.

Yue Y, Zhou Y, Wang Ja et al. (2016) Assessing wheat frost risk with the support of GIS: An approach coupling a growing season meteorological index and a hybrid fuzzy neural network model. Sustainability 8, 1308.

Zadoks JC, Chang TT, Konzak CF (1974) A decimal code for the growth stages of cereals. Weed Res 14, 415-421.