جداسازی، همسانه‌سازی و توالی‌یابی ژن aiiA از باکتری Paenibacillus polymyxa

Akbari Kiarood, S. L., Rahnama, K., Golmohammadi, M., & Nasrollanejad, S. (2020). Quorum‑quenching endophytic bacteria inhibit disease caused by Pseudomonas syringae pv. syringae in Citrus cultivars. Journal of Basic Microbiology, 60(9), 746-757. https://doi.org/10.1002/jobm.202000038

Anandan, K., & Vittal, R. R. (2019). Quorum quenching activity of AiiA lactonase (KMMI17) from endophytic Bacillus thuringiensis KMCL07 on AHL‑mediated pathogenic phenotype in Pseudomonas aeruginosa. Microbial Pathogenesis, 132, 230-242. https://doi.org/10.1016/j.micpath.2019.05.015

Ayyappan, S. V., & Bhaskaran, K. (2022). Extracellular lactonase‑mediated quorum quenching by a novel Bacillus velezensis. FEMS Microbiology Letters, 369(1). https://doi.org/10.1093/femsle/fnac095

Badarau, A., & Page, M. I. (2006). The variation of catalytic efficiency of Bacillus cereus metallo‑β‑lactamase with different active site metal ions. Biochemistry, 45(35), 10654-10666. https://doi.org/10.1021/bi060934l

Baltenneck, J., Reverchon, S., & Hommais, F. (2021). Quorum sensing regulation in phytopathogenic bacteria. Microorganisms, 9(2). https://doi.org/10.3390/microorganisms9020239

Bergonzi, C., Schwab, M., Naik, T., Daudé, D., Chabrière, E., & Elias, M. (2018). Structural and biochemical characterization of AaL, a quorum quenching lactonase with unusual kinetic properties. Scientific Reports, 8(1), 11262. https://doi.org/10.1038/s41598-018-28988-5

Chen, J., Liu, X., Min, Y., & Yang, Z. (2018). Construction of gene engineering bacteria of Paenibacillus polymyxa NR1 and functional analysis for aiiA gene expression. Chinese Journal of Biological Control, 34(3), 398. https://doi.org/10.16409/j.cnki.2095-039x

Churchill, M. E. A., & Chen, L. (2011). Structural basis of acyl‑homoserine lactone‑dependent signaling. Chemical Reviews, 111(1), 68-85. https://doi.org/10.1021/cr1000817

Dong, Y. H., Wang, L. H., Xu, J. L., Zhang, H. B., Zhang, X. F., & Zhang, L. H. (2001). Quenching quorum‑sensing‑dependent bacterial infection by an N‑acyl homoserine lactonase. Nature, 411(6839), 813-817. https://doi.org/10.1038/35081101

Dong, Y. H., Xu, J. L., Li, X. Z., & Zhang, L. H. (2000). AiiA, an enzyme that inactivates the acyl‑homoserine lactone quorum‑sensing signal and attenuates the virulence of Erwinia carotovora. Proceedings of the National Academy of Sciences of the United States of America, 97(7), 3526-3531. https://doi.org/10.1073/pnas.97.7.3526

Dong, Y.-H., Gusti, A. R., Zhang, Q., Xu, J.-L., & Zhang, L.-H. (2002). Identification of quorum‑quenching N‑acyl homoserine lactonases from Bacillus species. Applied and Environmental Microbiology, 68(4), 1754-1759. https://doi.org/10.1128/AEM.68.4.1754-1759.2002

Eberl, L. (1999). N‑acyl homoserine‑lactone‑mediated gene regulation in gram‑negative bacteria. Systematic and Applied Microbiology, 22(4), 493-506. https://doi.org/10.1016/S0723-2020(99)80001-0

Fuqua, C., & Greenberg, E. P. (1998). Self perception in bacteria: quorum sensing with acylated homoserine lactones. Current Opinion in Microbiology, 1(2), 183-189. https://doi.org/10.1016/S1369-5274(98)80009-X

Garge, S. S., & Nerurkar, A. S. (2016). Attenuation of quorum sensing regulated virulence of Pectobacterium carotovorum subsp. carotovorum through an AHL lactonase produced by Lysinibacillus sp. Gs50. PLOS ONE, 11(12), e0167344. https://doi.org/10.1371/journal.pone.0167344

Grady, E. N., MacDonald, J., Liu, L., Richman, A., & Yuan, Z.-C. (2016). Current knowledge and perspectives of Paenibacillus: a review. Microbial Cell Factories, 15(1), 203. https://doi.org/10.1186/S12934-016-0603-7

Helman, Y., & Chernin, L. (2015). Silencing the mob: disrupting quorum sensing as a means to fight plant disease. Molecular Plant Pathology, 16(3), 316-329. https://doi.org/10.1111/MPP.12180

Kachhadia, R., Kapadia, C., Datta, R., Jajda, H., Danish, S., & Glick, B. R. (2022). Cloning and characterization of AiiA, an acyl‑homoserine lactonase from Bacillus cereus RC1 to control soft rot causing pathogen Lelliottia amnigena RCE. Archives of Microbiology, 204(11), 665. https://doi.org/10.1007/S00203-022-03271-4

Langendries, S., & Goormachtig, S. (2021). Paenibacillus polymyxa, a Jack of all trades. Environmental Microbiology, 23(10), 5659-5669. https://doi.org/10.1111/1462-2920.15450

Leadbetter, J. R., & Greenberg, E. P. (2000). Metabolism of acyl‑homoserine lactone quorum‑sensing signals by Variovorax paradoxus. Journal of Bacteriology, 182(24), 6921-6926. https://doi.org/10.1128/JB.182.24.6921-6926.2000

Lee, S. J., Park, S.-Y., Lee, J.-J., Yum, D.-Y., Koo, B.-T., & Lee, J.-K. (2002). Genes encoding the N‑acyl homoserine lacton‑degrading enzyme are widespread in many subspecies of Bacillus thuringiensis. Applied and Environmental Microbiology, 68(8), 3919-3924. https://doi.org/10.1128/AEM.68.8.3919-3924.2002

Lei, M., Lu, P., Jin, L., Wang, Y., Qin, J., Xu, X., Zhang, L., & Wang, Y. (2015). Complete genome sequence of Paenibacillus polymyxa CF05, a strain of plant growth‑promoting rhizobacterium with elicitation of induced systemic resistance. Genome Announcements, 3(2). https://doi.org/10.1128/genomeA.00198-15

Luo, Y., Cheng, Y., Yi, J., Zhang, Z., Luo, Q., Zhang, D., & Li, Y. (2018). Complete genome sequence of industrial biocontrol strain Paenibacillus polymyxa HY96‑2 and further analysis of its biocontrol mechanism. Frontiers in Microbiology, 9, 1520. https://doi.org/10.3389/fmicb.2018.01520

Mahmoudi, E., Jafari, S. (2018). The effect of aiiA gene on the motility and enzymatic properties of Pectobacterium carotovorum, the causal agent of bacterial soft rot. Journal of Biological control of pests and plant diseases, 7, 93-103. https://doi.org/10.22059/jbioc.2019.276448.261. (In Persian)

Martinez, J. L., Fajardo, A., Garmendia, L., Hernandez, A., Linares, J. F., Martínez‑Solano, L., & Sánchez, M. B. (2009). A global view of antibiotic resistance. FEMS Microbiology Reviews, 33(1), 44-65. https://doi.org/10.1111/j.1574-6976.2008.00142.x

Molina, L., Rezzonico, F., Défago, G., & Duffy, B. (2005). Autoinduction in Erwinia amylovora: evidence of an acyl‑homoserine lactone signal in the fire blight pathogen. Journal of Bacteriology, 187(9), 3206-3213. https://doi.org/10.1128/JB.187.9.3206-3213.2005

Momb, J., Wang, C., Liu, D., Thomas, P. W., Petsko, G. A., Guo, H., Ringe, D., & Fast, W. (2008). Mechanism of the quorum‑quenching lactonase (AiiA) from Bacillus thuringiensis. 2. Substrate modeling and active site mutations. Biochemistry, 47(29), 7715-7725. https://doi.org/10.1021/bi8003704

Na, H., Namgung, B., Song, W. S., & Yoon, S. (2019). Structural and biochemical analyses of the metallo‑β‑lactamase fold protein YhfI from Bacillus subtilis. Biochemical and Biophysical Research Communications, 519(1), 35-40. https://doi.org/10.1016/j.bbrc.2019.08.106

Nealson, K. H., Platt, T., & Hastings, J. W. (1970). Cellular control of the synthesis and activity of the bacterial luminescent system. Journal of Bacteriology, 104(1), 313-322. https://doi.org/10.1128/JB.104.1.313‑322.1970

Ouyang, L. J., & Li, L. M. (2016). Effects of an inducible aiiA gene on disease resistance in Eucalyptus urophylla × Eucalyptus grandis. Transgenic Research, 25(4), 441-452. https://doi.org/10.1007/S11248-016-9940-X

Pan, J., Huang, T., Yao, F., Huang, Z., Powell, C. A., Qiu, S., & Guan, X. (2008). Expression and characterization of aiiA gene from Bacillus subtilis BS‑1. Microbiological Research, 163(6), 711-716. https://doi.org/10.1016/j.micres.2007.12.002

Papenfort, K., & Bassler, B. L. (2016). Quorum sensing signal‑response systems in Gram‑negative bacteria. Nature Reviews Microbiology, 14(9), 576-588. https://doi.org/10.1038/nrmicro.2016.89

Rasmussen, T. B., & Givskov, M. (2006). Quorum‑sensing inhibitors as anti‑pathogenic drugs. International Journal of Medical Microbiology, 296(2-3), 149-161. https://doi.org/10.1016/j.ijmm.2006.02.005

Schaad, N. W., Jones, J. B., & Chun, W. (2001). Laboratory guide for the identification of plant pathogenic bacteria (3rd ed.). American Phytopathological Society.

Sifri, C. D. (2008). Healthcare epidemiology: quorum sensing: bacteria talk sense. Clinical Infectious Diseases, 47(8), 1070-1076. https://doi.org/10.1086/592072

Sundin, G. W., Castiblanco, L. F., Yuan, X., Zeng, Q., & Yang, C.-H. (2016). Bacterial disease management: challenges, experience, innovation and future prospects: Challenges in bacterial molecular plant pathology. Molecular Plant Pathology, 17(9), 1506-1518. https://doi.org/10.1111/MPP.12436

Ulrich, R. L. (2004). Quorum quenching: enzymatic disruption of N‑acyl‑homoserine lactone‑mediated bacterial communication in Burkholderia thailandensis. Applied and Environmental Microbiology, 70(10), 6173-6180. https://doi.org/10.1128/AEM.70.10.6173-6180.2004

Vos, P., Garrity, G., Jones, D., Krieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K.-H., & Whitman, W. B. (2011). Bergey’s manual of systematic bacteriology: Volume 3: The Firmicutes (Vol. 3). Springer Science & Business Media. https://doi.org/10.1007/978-0-387-68489-5

Wilson, K. (2001). Preparation of genomic DNA from bacteria. Current Protocols in Molecular Biology, 56(1), 2-4. https://doi.org/10.1002/0471142727.mb0204s56

Zhu, C.-G., Sun, M., & Yu, Z.-N. (2003). Expression of gene aiiA carrying the promoter of gene cry3Aa in Bacillus thuringiensis. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology, 19(4), 397-401. https://pubmed.ncbi.nlm.nih.gov/15969053/